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visitnoSeqs/Sample PD_whole_tree Ave.PD_whole_tree Err. chao1 Ave.chao1 Err. observed_species Ave.observed_species Err.
1200.0 4.106 0.050 33.372 0.580 23.007 0.352
1360.0 4.608 0.055 39.192 0.691 28.185 0.444
1520.0 4.926 0.058 43.130 0.762 31.710 0.506
1680.0 5.157 0.060 46.321 0.830 34.412 0.555
1840.0 5.336 0.062 48.561 0.881 36.611 0.597
11000.0 5.487 0.063 50.667 0.948 38.467 0.633
2200.0 4.225 0.057 35.236 0.715 23.721 0.422
2360.0 4.763 0.063 42.132 0.866 29.442 0.543
2520.0 5.108 0.067 46.479 0.962 33.350 0.627
2680.0 5.363 0.070 50.160 1.055 36.351 0.694
2840.0 5.558 0.072 52.707 1.122 38.786 0.748
21000.0 5.723 0.074 54.966 1.204 40.865 0.794
3200.0 3.509 0.345 25.100 2.173 18.200 1.750
3360.0 3.910 0.371 29.259 2.410 21.880 1.804
3520.0 4.262 0.386 34.487 2.925 24.900 2.101
3680.0 4.432 0.370 36.010 2.995 26.920 2.119
3840.0 4.624 0.371 38.188 4.089 28.720 2.317
31000.0 4.810 0.348 37.257 3.866 30.200 2.375
HMPbodysubsiteSeqs/Sample PD_whole_tree Ave.PD_whole_tree Err. chao1 Ave.chao1 Err. observed_species Ave.observed_species Err.
Anterior_nares200.0 3.133 0.131 26.998 1.575 16.724 0.917
Anterior_nares360.0 3.684 0.155 33.364 1.979 21.399 1.184
Anterior_nares520.0 4.059 0.163 37.327 2.279 24.831 1.360
Anterior_nares680.0 4.321 0.171 39.624 2.363 27.354 1.499
Anterior_nares840.0 4.521 0.179 41.237 2.376 29.498 1.620
Anterior_nares1000.0 4.697 0.184 42.301 2.496 31.345 1.716
Attached_Keratinized_gingiva200.0 3.333 0.065 22.488 0.724 16.506 0.458
Attached_Keratinized_gingiva360.0 3.686 0.072 27.017 0.868 19.833 0.561
Attached_Keratinized_gingiva520.0 3.938 0.077 30.111 0.944 22.239 0.628
Attached_Keratinized_gingiva680.0 4.116 0.080 32.339 1.020 24.019 0.683
Attached_Keratinized_gingiva840.0 4.263 0.082 34.474 1.075 25.536 0.717
Attached_Keratinized_gingiva1000.0 4.381 0.085 36.040 1.217 26.812 0.755
Buccal_mucosa200.0 4.105 0.082 34.477 0.958 22.604 0.583
Buccal_mucosa360.0 4.642 0.089 41.383 1.207 28.169 0.737
Buccal_mucosa520.0 5.019 0.095 45.092 1.289 32.147 0.843
Buccal_mucosa680.0 5.268 0.099 48.535 1.387 35.130 0.919
Buccal_mucosa840.0 5.487 0.102 50.557 1.423 37.629 0.981
Buccal_mucosa1000.0 5.656 0.105 52.361 1.495 39.669 1.032
Hard_palate200.0 4.906 0.076 37.660 0.911 25.799 0.523
Hard_palate360.0 5.499 0.083 43.784 1.053 31.703 0.649
Hard_palate520.0 5.861 0.088 48.150 1.273 35.608 0.753
Hard_palate680.0 6.121 0.093 51.681 1.398 38.701 0.834
Hard_palate840.0 6.316 0.096 54.812 1.598 41.094 0.908
Hard_palate1000.0 6.481 0.099 57.243 1.877 43.219 0.974
Left_Antecubital_fossa200.0 3.897 0.262 38.795 4.331 25.315 2.336
Left_Antecubital_fossa360.0 4.442 0.315 44.228 5.335 31.479 3.184
Left_Antecubital_fossa520.0 4.768 0.347 48.128 5.703 35.585 3.731
Left_Antecubital_fossa680.0 4.979 0.370 50.597 6.264 38.519 4.185
Left_Antecubital_fossa840.0 5.172 0.391 52.326 6.482 41.008 4.540
Left_Antecubital_fossa1000.0 5.317 0.408 54.967 7.020 43.077 4.853
Left_Retroauricular_crease200.0 2.525 0.142 21.268 1.911 13.262 0.989
Left_Retroauricular_crease360.0 3.019 0.170 27.100 2.387 17.168 1.305
Left_Retroauricular_crease520.0 3.336 0.184 30.907 2.603 20.046 1.543
Left_Retroauricular_crease680.0 3.567 0.197 32.636 2.794 22.119 1.711
Left_Retroauricular_crease840.0 3.747 0.209 34.523 3.037 23.913 1.885
Left_Retroauricular_crease1000.0 3.911 0.217 36.144 3.244 25.410 2.014
Mid_vagina200.0 1.651 0.089 7.864 0.537 5.990 0.357
Mid_vagina360.0 1.946 0.099 10.318 0.846 7.507 0.426
Mid_vagina520.0 2.127 0.107 11.598 0.847 8.516 0.488
Mid_vagina680.0 2.276 0.113 13.008 1.009 9.450 0.550
Mid_vagina840.0 2.389 0.118 13.708 1.078 10.152 0.602
Mid_vagina1000.0 2.487 0.122 14.063 1.124 10.756 0.641
Palatine_Tonsils200.0 5.605 0.079 42.289 0.939 29.724 0.608
Palatine_Tonsils360.0 6.247 0.085 48.925 1.047 36.080 0.748
Palatine_Tonsils520.0 6.649 0.090 54.246 1.157 40.399 0.832
Palatine_Tonsils680.0 6.935 0.092 58.045 1.275 43.630 0.899
Palatine_Tonsils840.0 7.163 0.095 61.736 1.470 46.357 0.957
Palatine_Tonsils1000.0 7.337 0.097 64.893 1.658 48.556 1.000
Posterior_fornix200.0 1.237 0.070 5.203 0.378 4.367 0.273
Posterior_fornix360.0 1.394 0.081 6.346 0.454 5.241 0.332
Posterior_fornix520.0 1.495 0.088 7.087 0.524 5.842 0.376
Posterior_fornix680.0 1.606 0.094 7.958 0.620 6.365 0.407
Posterior_fornix840.0 1.679 0.098 8.481 0.678 6.768 0.431
Posterior_fornix1000.0 1.748 0.103 9.051 0.760 7.139 0.459
Right_Antecubital_fossa200.0 3.847 0.259 35.121 4.109 24.213 2.367
Right_Antecubital_fossa360.0 4.327 0.308 41.254 5.147 29.913 3.190
Right_Antecubital_fossa520.0 4.662 0.345 45.433 5.626 33.881 3.765
Right_Antecubital_fossa680.0 4.905 0.372 49.317 6.163 36.806 4.200
Right_Antecubital_fossa840.0 5.081 0.393 50.665 6.319 39.102 4.548
Right_Antecubital_fossa1000.0 5.223 0.410 52.094 6.667 40.963 4.821
Right_Retroauricular_crease200.0 2.359 0.146 18.990 2.125 11.996 1.003
Right_Retroauricular_crease360.0 2.741 0.166 21.930 2.183 14.978 1.254
Right_Retroauricular_crease520.0 2.990 0.179 24.475 2.353 16.986 1.422
Right_Retroauricular_crease680.0 3.183 0.188 27.222 2.546 18.645 1.558
Right_Retroauricular_crease840.0 3.323 0.196 28.718 2.743 19.987 1.690
Right_Retroauricular_crease1000.0 3.476 0.203 30.496 2.947 21.247 1.792
Saliva200.0 5.912 0.077 49.882 1.258 34.557 0.702
Saliva360.0 6.549 0.092 58.019 1.560 42.544 0.946
Saliva520.0 6.913 0.101 63.526 1.797 47.683 1.105
Saliva680.0 7.183 0.109 67.495 2.036 51.410 1.236
Saliva840.0 7.384 0.116 70.122 2.266 54.497 1.359
Saliva1000.0 7.550 0.121 72.466 2.471 57.032 1.452
Stool200.0 4.296 0.078 62.225 1.917 34.582 0.952
Stool360.0 5.033 0.094 78.274 2.354 45.711 1.299
Stool520.0 5.541 0.105 88.068 2.639 53.855 1.547
Stool680.0 5.949 0.115 97.183 2.884 60.655 1.757
Stool840.0 6.255 0.122 103.856 3.090 66.182 1.917
Stool1000.0 6.538 0.128 109.524 3.440 71.084 2.058
Subgingival_plaque200.0 5.442 0.101 46.050 1.209 33.479 0.757
Subgingival_plaque360.0 6.040 0.112 52.064 1.298 40.339 0.960
Subgingival_plaque520.0 6.395 0.119 56.147 1.467 44.619 1.081
Subgingival_plaque680.0 6.641 0.123 60.474 1.562 47.922 1.169
Subgingival_plaque840.0 6.831 0.128 62.246 1.623 50.393 1.246
Subgingival_plaque1000.0 6.996 0.129 65.041 1.801 52.541 1.296
Supragingival_plaque200.0 4.697 0.094 39.129 1.060 29.360 0.708
Supragingival_plaque360.0 5.194 0.104 45.312 1.251 35.118 0.893
Supragingival_plaque520.0 5.506 0.112 49.120 1.370 38.819 1.005
Supragingival_plaque680.0 5.732 0.115 52.108 1.477 41.492 1.080
Supragingival_plaque840.0 5.893 0.119 54.486 1.642 43.625 1.151
Supragingival_plaque1000.0 6.027 0.122 56.496 1.819 45.427 1.205
Throat200.0 5.513 0.078 40.498 1.001 28.960 0.598
Throat360.0 6.127 0.090 47.016 1.252 35.037 0.779
Throat520.0 6.488 0.095 51.069 1.345 39.089 0.899
Throat680.0 6.760 0.099 55.051 1.550 42.174 0.999
Throat840.0 6.950 0.104 56.714 1.622 44.566 1.079
Throat1000.0 7.110 0.106 58.931 1.809 46.581 1.141
Tongue_dorsum200.0 4.931 0.060 30.063 0.552 22.667 0.354
Tongue_dorsum360.0 5.417 0.067 34.890 0.686 26.853 0.438
Tongue_dorsum520.0 5.733 0.070 38.077 0.736 29.688 0.485
Tongue_dorsum680.0 5.938 0.073 40.272 0.875 31.737 0.526
Tongue_dorsum840.0 6.112 0.074 41.944 0.911 33.485 0.565
Tongue_dorsum1000.0 6.240 0.075 43.084 1.015 34.846 0.592
Vaginal_introitus200.0 1.932 0.096 10.005 0.888 7.199 0.433
Vaginal_introitus360.0 2.246 0.106 12.510 0.959 9.053 0.544
Vaginal_introitus520.0 2.437 0.114 14.337 1.074 10.229 0.614
Vaginal_introitus680.0 2.612 0.120 15.708 1.280 11.305 0.690
Vaginal_introitus840.0 2.731 0.125 16.926 1.271 12.169 0.746
Vaginal_introitus1000.0 2.849 0.130 18.316 1.449 12.962 0.804
sexSeqs/Sample PD_whole_tree Ave.PD_whole_tree Err. chao1 Ave.chao1 Err. observed_species Ave.observed_species Err.
female200.0 3.865 0.054 31.250 0.630 21.336 0.387
female360.0 4.352 0.060 36.990 0.754 26.276 0.488
female520.0 4.668 0.063 40.838 0.824 29.680 0.557
female680.0 4.901 0.066 44.199 0.907 32.313 0.611
female840.0 5.080 0.068 46.300 0.960 34.438 0.656
female1000.0 5.231 0.069 48.295 1.032 36.232 0.694
male200.0 4.522 0.047 37.826 0.618 25.786 0.351
male360.0 5.078 0.052 44.791 0.750 31.787 0.455
male520.0 5.426 0.055 49.249 0.847 35.836 0.528
male680.0 5.679 0.058 52.695 0.921 38.914 0.588
male840.0 5.873 0.060 55.411 0.983 41.435 0.637
male1000.0 6.036 0.061 57.789 1.057 43.585 0.679